STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EUC00407.1Long-chain-fatty-acid--CoA ligase; KEGG: fadD, acyl-CoA synthetase; PFAM: AMP-dependent synthetase and ligase, Domain of unknown function DUF4009. (565 aa)    
Predicted Functional Partners:
EUB94938.1
6-deoxyerythronolide-B synthase, NADPH:quinone reductase; PFAM: Beta-ketoacyl synthase, Acyl transferase, acyl carrier protein familyprotein, Alcohol dehydrogenase zinc-binding domain protein, KR domain protein, Alcohol dehydrogenase GroES domain protein; KEGG: rkpA, putative type I polyketide synthase RkpA; SMART: Polyketide synthase, enoylreductase, Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase/Fatty acid synthase, KR, Polyketide synthase, phosphopantetheine-binding protein, Polyketide synthase, dehydratase domain-containing protein, Polyk [...]
 
 0.978
EUB98673.1
3-hydroxybutyryl-CoA epimerase; KEGG: fadb1, putative fatty oxidation complex alpha subunit; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein, 3-hydroxyacyl-CoA dehydrogenase domain-containing protein, Enoyl-CoA hydratase/isomerase.
 
 0.922
rplF
Ribosomal protein L6, subgroup; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.918
EUB97734.1
TIGRFAM: Natural product biosynthesis luciferase-like monooxygenase domain; PFAM: AMP-dependent synthetase and ligase, formyl transferase domain protein, luciferase family protein, acyl carrier protein familyprotein; KEGG: amino acid adenylation protein; SMART: Polyketide synthase, phosphopantetheine-binding protein.
 
0.907
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
 
 0.906
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.904
EUC01150.1
3-hydroxybutyryl-CoA epimerase; KEGG: peroxisomal bifunctional enzyme; PFAM: Enoyl-CoA hydratase/isomerase, 3-hydroxyacyl-CoA dehydrogenase domain-containing protein, 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein.
  
 0.904
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
    
   0.895
rplC
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
 
 0.894
EUB97735.1
6-deoxyerythronolide-B synthase, Phenylalanine racemase (ATP-hydrolyzing); PFAM: Beta-ketoacyl synthase, acyl carrier protein familyprotein, Thioesterase, Acyl transferase, KR domain protein; KEGG: non-ribosomal peptide synthase; SMART: Polyketide synthase, beta-ketoacyl synthase region-containing protein, Polyketide synthase, phosphopantetheine-binding protein, Polyketide synthase, thioesterase domain-containing protein, Polyketide synthase, acyl transferase domain-containing protein, Polyketide synthase, dehydratase domain-containing protein, Polyketide synthase/Fatty acid synthase, KR.
 
 0.891
Your Current Organism:
Rhizobium sp. CF080
NCBI taxonomy Id: 1144310
Other names: R. sp. CF080
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.