STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJL62823.1HIT family hydrolase, diadenosine tetraphosphate hydrolase; PFAM: HIT domain. (141 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase, beta'' subunit, predominant form; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.560
EJL63566.1
PFAM: RNA polymerase Rpb6.
   
 
  0.520
EJL62824.1
PFAM: TonB-dependent Receptor Plug Domain, TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor.
       0.480
EJL66272.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain, Type III restriction enzyme, res subunit.
    
  0.476
EJL62277.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain, Type III restriction enzyme, res subunit.
    
  0.476
EJL61491.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
   0.466
EJL66553.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthases, NADH/NADPH, small subunit.
    
   0.420
Your Current Organism:
Flavobacterium sp. CF136
NCBI taxonomy Id: 1144313
Other names: F. sp. CF136
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