STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJL91324.1Hypothetical protein; PFAM: CsbD-like; Belongs to the UPF0337 (CsbD) family. (70 aa)    
Predicted Functional Partners:
EJL91323.1
Hypothetical protein.
 
  
 0.850
EJL91322.1
Putative periplasmic or secreted lipoprotein; PFAM: Putative phospholipid-binding domain.
 
  
 0.826
EJL84610.1
Putative periplasmic or secreted lipoprotein; PFAM: Putative phospholipid-binding domain.
 
  
 0.791
EJL94589.1
Putative periplasmic or secreted lipoprotein; PFAM: Putative phospholipid-binding domain.
 
  
 0.756
EJL91325.1
Bacterioferritin (cytochrome b1); PFAM: Ferritin-like domain.
  
    0.716
EJL91326.1
PFAM: Bacterial protein of unknown function (DUF883).
  
  
 0.682
EJL90436.1
Hypothetical protein.
  
    0.624
EJL89646.1
Putative periplasmic or secreted lipoprotein; PFAM: Putative phospholipid-binding domain.
  
  
 0.612
EJL90752.1
PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily.
 
  
 0.600
EJL94249.1
PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, Ohr subfamily.
  
  
 0.516
Your Current Organism:
Herbaspirillum sp. CF444
NCBI taxonomy Id: 1144319
Other names: H. sp. CF444
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.