STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJL88544.1ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; Belongs to the ABC transporter superfamily. (359 aa)    
Predicted Functional Partners:
EJL83664.1
ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.984
EJL88543.1
ABC-type Fe3+ transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.978
EJL88542.1
ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
 
 
 0.933
EJL92728.1
ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.856
EJL92727.1
ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.850
EJL93252.1
ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.839
EJL90417.1
ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.834
EJL87728.1
ABC-type spermidine/putrescine transport system, permease component I.
 
 0.825
EJL94610.1
PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: putative 2-aminoethylphosphonate ABC transporter, permease protein.
 
 
 0.821
EJL93253.1
ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.820
Your Current Organism:
Herbaspirillum sp. CF444
NCBI taxonomy Id: 1144319
Other names: H. sp. CF444
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