STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJL86071.1Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: DJ-1/PfpI family. (330 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.788
EJL86070.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
       0.672
rpoS
RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response.
   
 
 0.607
rpoH
Alternative sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
   
 
 0.607
EJL86069.1
Nicotinamidase-like amidase; PFAM: Isochorismatase family.
  
    0.583
lexA
SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
   0.523
EJL83792.1
DNA-binding domain-containing protein, AraC-type.
 
 
 0.522
EJL87519.1
Putative nucleoside-diphosphate sugar epimerase; PFAM: NmrA-like family.
 
    0.505
EJL93344.1
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase; PFAM: AlkA N-terminal domain, HhH-GPD superfamily base excision DNA repair protein.
  
  
  0.495
EJL83307.1
Putative transcriptional regulator; PFAM: Peptidase S24-like; Belongs to the peptidase S24 family.
   
   0.494
Your Current Organism:
Herbaspirillum sp. CF444
NCBI taxonomy Id: 1144319
Other names: H. sp. CF444
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