STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJL84217.1ABC-type metal ion transport system, periplasmic component/surface adhesin; PFAM: Periplasmic solute binding protein family; Belongs to the bacterial solute-binding protein 9 family. (305 aa)    
Predicted Functional Partners:
EJL84218.1
ABC-type Mn2+/Zn2+ transport system, permease component; PFAM: ABC 3 transport family.
 
 0.999
EJL84219.1
ATPase component of Mn/Zn ABC-type transporter; PFAM: ABC transporter.
 
 
 0.998
EJL84221.1
PFAM: Protein of unknown function (DUF2796).
    
 0.842
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.754
rpmB
PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.751
EJL86960.1
Putative GTPase, G3E family; PFAM: Cobalamin synthesis protein cobW C-terminal domain, CobW/HypB/UreG, nucleotide-binding domain.
  
  
 0.744
EJL81083.1
Putative GTPase, G3E family; PFAM: CobW/HypB/UreG, nucleotide-binding domain, Cobalamin synthesis protein cobW C-terminal domain.
  
  
 0.744
EJL84220.1
Hypothetical protein.
       0.686
EJL90433.1
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component; PFAM: ABC transporter.
 
  
 0.642
EJL94065.1
Amino acid adenylation enzyme/thioester reductase family protein; PFAM: Phosphopantetheine attachment site, Thioesterase domain, Beta-ketoacyl synthase, N-terminal domain, Condensation domain, AMP-binding enzyme, Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: amino acid adenylation domain.
  
  
 0.634
Your Current Organism:
Herbaspirillum sp. CF444
NCBI taxonomy Id: 1144319
Other names: H. sp. CF444
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.