STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJN09733.1PFAM: Bacterial regulatory proteins, tetR family. (210 aa)    
Predicted Functional Partners:
fusA
Translation elongation factor EF-G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF- [...]
     
 0.512
EJN07744.1
PFAM: Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.483
EJM98247.1
PFAM: Pyruvate kinase, barrel domain, Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.483
EJN08479.1
PFAM: Sigma-70, region 4, Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
  
 0.464
EJM97504.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase.
  
 
 0.432
EJN08480.1
Alkylhydroperoxidase AhpD family core domain containing protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
    0.414
EJN05926.1
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
     
 0.410
EJN07852.1
DNA-binding domain-containing protein, AraC-type.
  
   
 0.406
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.400
Your Current Organism:
Herbaspirillum sp. YR522
NCBI taxonomy Id: 1144342
Other names: H. sp. YR522
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.