STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJN03571.1PFAM: Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. (305 aa)    
Predicted Functional Partners:
EJN01435.1
Transcriptional regulator; PFAM: LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.620
EJN03572.1
Outer membrane protein V; PFAM: MltA-interacting protein MipA.
       0.558
EJN03573.1
PFAM: Response regulator receiver domain, Transcriptional regulatory protein, C terminal.
       0.554
EJN03574.1
PFAM: HAMP domain, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase, His Kinase A (phosphoacceptor) domain.
       0.554
EJN07030.1
PFAM: Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.521
EJN03570.1
PFAM: Malate synthase; TIGRFAM: malate synthase A; Belongs to the malate synthase family.
       0.496
EJN00327.1
PFAM: Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.438
EJN10201.1
Transcriptional regulator; PFAM: LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.416
EJN08412.1
PFAM: Bacterial regulatory helix-turn-helix protein, lysR family, LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.410
Your Current Organism:
Herbaspirillum sp. YR522
NCBI taxonomy Id: 1144342
Other names: H. sp. YR522
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.