STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJM97310.1Transcriptional regulator with HTH domain and aminotransferase domain containing protein; PFAM: Bacterial regulatory proteins, gntR family, Aminotransferase class I and II. (509 aa)    
Predicted Functional Partners:
EJN07312.1
Chorismate mutase, clade 2; PFAM: Prephenate dehydratase, Chorismate mutase type II, ACT domain; TIGRFAM: chorismate mutase domain of proteobacterial P-protein, clade 2.
    
 0.757
EJM95294.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: Phosphopantetheine attachment site, Condensation domain.
  
 
 0.712
EJN01795.1
PFAM: Phosphopantetheine attachment site, AMP-binding enzyme, Condensation domain; TIGRFAM: amino acid adenylation domain, non-ribosomal peptide synthase domain TIGR01720.
   
 
 0.628
EJN10086.1
PFAM: Aminotransferase class I and II.
  
 
 0.600
EJM95601.1
Transcriptional regulator with HTH domain and aminotransferase domain containing protein; PFAM: Aminotransferase class I and II, Bacterial regulatory proteins, gntR family.
  
  
 
0.592
EJN00953.1
Transcriptional regulator with HTH domain and aminotransferase domain containing protein; PFAM: Bacterial regulatory proteins, gntR family, Aminotransferase class I and II.
  
  
 
0.590
EJN07034.1
PFAM: Aminotransferase class I and II.
   
 0.514
EJM96285.1
PFAM: Aminotransferase class I and II.
   
 0.514
EJM97311.1
Hypothetical protein.
       0.512
EJN02052.1
Aminodeoxychorismate synthase, component I; PFAM: Aminotransferase class IV, chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, bacterial clade.
  
 0.507
Your Current Organism:
Herbaspirillum sp. YR522
NCBI taxonomy Id: 1144342
Other names: H. sp. YR522
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.