STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJM96089.1Hypothetical protein. (838 aa)    
Predicted Functional Partners:
apaH
Symmetrical bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
   
 0.972
EJN08297.1
PFAM: Glycosyltransferase family 9 (heptosyltransferase), Tetratricopeptide repeat.
   
 0.949
EJN09372.1
ATP-dependent helicase HrpA; PFAM: Helicase conserved C-terminal domain, Helicase associated domain (HA2), Domain of unknown function (DUF3418), DEAD/DEAH box helicase, Domain of unknown function (DUF1605); TIGRFAM: ATP-dependent helicase HrpA.
    
 0.907
EJN09572.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase.
    
 0.883
rpsC
Ribosomal protein S3, bacterial type; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 0.883
EJN03248.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase.
    
 0.883
EJM97504.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase.
    
 0.883
EJM96303.1
Choline dehydrogenase-like flavoprotein; PFAM: GMC oxidoreductase, FAD dependent oxidoreductase.
    
 0.883
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.855
EJM98417.1
Putative phosphohydrolase; PFAM: Calcineurin-like phosphoesterase.
   
 0.854
Your Current Organism:
Herbaspirillum sp. YR522
NCBI taxonomy Id: 1144342
Other names: H. sp. YR522
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.