STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002087335_00410Unannotated protein. (291 aa)    
Predicted Functional Partners:
GCA_002087335_00414
Unannotated protein.
 
  
 0.935
GCA_002087335_00413
Unannotated protein.
  
  
 0.918
GCA_002087335_00412
Unannotated protein.
 
  
 0.903
GCA_002087335_00411
Unannotated protein.
  
  
 0.857
GCA_002087335_00415
Unannotated protein.
 
   
 0.775
GCA_002087335_00409
Unannotated protein.
 
     0.732
GCA_002087335_03231
Unannotated protein.
 
   0.695
GCA_002087335_04254
Unannotated protein.
 
     0.663
GCA_002087335_02306
Unannotated protein.
  
     0.653
GCA_002087335_02361
Unannotated protein.
  
    0.651
Your Current Organism:
Pseudophaeobacter leonis
NCBI taxonomy Id: 1144477
Other names: CIP 110369, DSM 25627, P. leonis, Phaeobacter leonis, Phaeobacter leonis Gaboyer et al. 2013, Phaeobacter sp. 306, Pseudophaeobacter leonis (Gaboyer et al. 2013) Breider et al. 2014, UBOCC 3187, strain 306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.