STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002087335_01821Unannotated protein. (166 aa)    
Predicted Functional Partners:
GCA_002087335_01820
Unannotated protein.
 
 
 0.944
GCA_002087335_05246
Unannotated protein.
  
 
 0.814
GCA_002087335_02778
Unannotated protein.
  
 
 0.782
GCA_002087335_02614
Unannotated protein.
   
    0.738
GCA_002087335_03251
Unannotated protein.
   
    0.738
GCA_002087335_04503
Unannotated protein.
  
     0.720
GCA_002087335_00352
Unannotated protein.
 
 
 0.695
GCA_002087335_00067
Unannotated protein.
  
  
  0.689
GCA_002087335_03333
Unannotated protein.
     
 0.682
GCA_002087335_01905
Unannotated protein.
     
 0.621
Your Current Organism:
Pseudophaeobacter leonis
NCBI taxonomy Id: 1144477
Other names: CIP 110369, DSM 25627, P. leonis, Phaeobacter leonis, Phaeobacter leonis Gaboyer et al. 2013, Phaeobacter sp. 306, Pseudophaeobacter leonis (Gaboyer et al. 2013) Breider et al. 2014, UBOCC 3187, strain 306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.