STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002087335_03290Unannotated protein. (187 aa)    
Predicted Functional Partners:
GCA_002087335_04350
Unannotated protein.
 
 0.938
GCA_002087335_04747
Unannotated protein.
 
      0.873
GCA_002087335_03265
Unannotated protein.
  
 
 0.821
GCA_002087335_05245
Unannotated protein.
 
 
 0.751
GCA_002087335_02381
Unannotated protein.
 
 
 0.734
GCA_002087335_02015
Unannotated protein.
  
 
 0.733
GCA_002087335_02969
Unannotated protein.
 
  
 0.728
GCA_002087335_02968
Unannotated protein.
 
  
 0.722
GCA_002087335_02973
Unannotated protein.
  
  
 0.688
GCA_002087335_00811
Unannotated protein.
  
  
 0.610
Your Current Organism:
Pseudophaeobacter leonis
NCBI taxonomy Id: 1144477
Other names: CIP 110369, DSM 25627, P. leonis, Phaeobacter leonis, Phaeobacter leonis Gaboyer et al. 2013, Phaeobacter sp. 306, Pseudophaeobacter leonis (Gaboyer et al. 2013) Breider et al. 2014, UBOCC 3187, strain 306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.