STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002087335_04004Unannotated protein. (173 aa)    
Predicted Functional Partners:
GCA_002087335_04005
Unannotated protein.
  
 0.997
GCA_002087335_04003
Unannotated protein.
     0.994
GCA_002087335_04692
Unannotated protein.
   
 0.969
GCA_002087335_01829
Unannotated protein.
 
 
  0.918
GCA_002087335_00553
Unannotated protein.
  
 
 0.808
GCA_002087335_01752
Unannotated protein.
  
 
 0.778
GCA_002087335_00894
Unannotated protein.
     
 0.769
GCA_002087335_02663
Unannotated protein.
     
 0.766
GCA_002087335_01466
Unannotated protein.
  
 
 0.714
GCA_002087335_03226
Unannotated protein.
  
 
 0.714
Your Current Organism:
Pseudophaeobacter leonis
NCBI taxonomy Id: 1144477
Other names: CIP 110369, DSM 25627, P. leonis, Phaeobacter leonis, Phaeobacter leonis Gaboyer et al. 2013, Phaeobacter sp. 306, Pseudophaeobacter leonis (Gaboyer et al. 2013) Breider et al. 2014, UBOCC 3187, strain 306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.