STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002087335_05005Unannotated protein. (88 aa)    
Predicted Functional Partners:
GCA_002087335_05006
Unannotated protein.
     0.986
GCA_002087335_05007
Unannotated protein.
       0.675
GCA_002087335_00447
Unannotated protein.
  
     0.618
GCA_002087335_05008
Unannotated protein.
       0.574
GCA_002087335_02098
Unannotated protein.
  
     0.573
GCA_002087335_00444
Unannotated protein.
  
    0.500
GCA_002087335_03376
Unannotated protein.
  
    0.498
GCA_002087335_01054
Unannotated protein.
  
    0.493
GCA_002087335_01754
Unannotated protein.
  
    0.482
GCA_002087335_00907
Unannotated protein.
  
  
 0.467
Your Current Organism:
Pseudophaeobacter leonis
NCBI taxonomy Id: 1144477
Other names: CIP 110369, DSM 25627, P. leonis, Phaeobacter leonis, Phaeobacter leonis Gaboyer et al. 2013, Phaeobacter sp. 306, Pseudophaeobacter leonis (Gaboyer et al. 2013) Breider et al. 2014, UBOCC 3187, strain 306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.