STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002087335_05136Unannotated protein. (210 aa)    
Predicted Functional Partners:
GCA_002087335_04163
Unannotated protein.
 
 
 0.989
GCA_002087335_00620
Unannotated protein.
 
 
 0.987
GCA_002087335_04160
Unannotated protein.
 
 
 0.954
GCA_002087335_04162
Unannotated protein.
  
 
 0.934
GCA_002087335_04252
Unannotated protein.
     
 0.821
GCA_002087335_04877
Unannotated protein.
     
 0.821
GCA_002087335_01602
Unannotated protein.
  
  
 0.788
GCA_002087335_01603
Unannotated protein.
  
  
 0.788
GCA_002087335_03906
Unannotated protein.
  
  0.645
GCA_002087335_00621
Unannotated protein.
  
 
 0.635
Your Current Organism:
Pseudophaeobacter leonis
NCBI taxonomy Id: 1144477
Other names: CIP 110369, DSM 25627, P. leonis, Phaeobacter leonis, Phaeobacter leonis Gaboyer et al. 2013, Phaeobacter sp. 306, Pseudophaeobacter leonis (Gaboyer et al. 2013) Breider et al. 2014, UBOCC 3187, strain 306
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.