Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BRADO0010Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (380 aa)    
Predicted Functional Partners:
BRADO0957
Putative TrapT family, dctQ subunit, C4-dicarboxylate transport; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.664
BRADO0698
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
   
 0.649
BRADO2983
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.649
BRADO5393
Putative nitrogen fixation protein nifQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
   
    0.649
BRADO0437
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.616
BRADO4004
Putative outer-membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
     0.571
BRADO5009
Putative intracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
     0.571
BRADO0011
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.558
BRADO4149
Putative outer-membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
     0.549
BRADO6543
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.540
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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