Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRADO1007Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (424 aa)    
Predicted Functional Partners:
BRADO1008
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.960
BRADO2208
Hypothetical protein; No homology to any previously reported sequences.
 
     0.751
BRADO5340
Putative LexA repressor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.711
BRADO5482
Putative ABC transporter (periplasmic binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.709
BRADO3726
Hypothetical protein; No homology to any previously reported sequences.
  
     0.693
BRADO1463
Hypothetical protein; No homology to any previously reported sequences.
 
     0.681
BRADO5285
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.676
BRADO0058
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.669
BRADO0900
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.655
BRADO3554
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.650
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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