STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRADO1506Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (124 aa)    
Predicted Functional Partners:
BRADO1977
Cytochrome b/c1 [Contains: Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.980
BRADO1976
Ubiquinol-cytochrome c reductase iron-sulfur subunit (Rieske iron-sulfur protein) (RISP); Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.768
BRADO3898
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 0.768
nuoD
NADH-quinone oxidoreductase chain D (NADH dehydrogenase I, chain D) (NDH-1, chain D); NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
 
 0.643
BRADO2438
Cytochrome c oxidase polypeptide I; Function of strongly homologous gene; carrier; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.624
sdhC
Succinate dehydrogenase cytochrome b556 subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
  
 0.612
cyoC
Cytochrome o ubiquinol oxidase subunit III (Ubiquinol oxidase chain C); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.571
norE
NorE protein involved in nitric oxide reduction (Cytochrome c oxidase subunit III-like protein); Function of strongly homologous gene; enzyme.
  
 0.571
cyoC-2
Cytochrome o ubiquinol oxidase, subunit III; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.571
coxC-2
Cytochrome c oxidase, subunit III; Function of strongly homologous gene; enzyme.
  
 0.571
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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