STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BRADO2113Putative transcriptional regulatory protein, IclR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (260 aa)    
Predicted Functional Partners:
BRADO2112
Putative ABC spermidine/putrescine transporter permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.773
BRADO2110
Putative spermidine/putrescine-binding periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     0.709
BRADO3858
Putative transcriptional regulatory protein, IclR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.709
BRADO1546
Putative Transcriptional regulator, IclR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.706
BRADO6044
Putative transcriptional regulatory protein, IclR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.660
BRADO2111
Putative ABC spermidine/putrescine transporter permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.642
BRADO3798
Putative carboxylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.642
BRADO3797
Putative carboxylase, like RuBisCO, small subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.630
potA
Putative sperimidine/putrescine transport protein (ABC superfamily, atp_bind); Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
       0.621
BRADO3131
Putative transcriptional regulatory protein, IclR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.616
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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