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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livG-2High-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind); Function of strongly homologous gene; transporter. (263 aa)    
Predicted Functional Partners:
BRADO2120
Putative high-affinity branched-chain amino acid transport system permease protein livM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.983
BRADO2119
Putative branched-chain amino acid ABC transporter, periplasmic substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.898
livF-3
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
0.886
BRADO2123
Putative transcriptional regulatory protein, MarR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.846
BRADO5595
Putative branched-chain amino acid ABC transporter (permease protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.766
BRADO2117
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.726
BRADO2116
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.712
BRADO2118
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.706
BRADO5596
Putative branched-chain amino acid ABC transporter (permease protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.685
BRADO5852
Putative branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.669
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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