STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
livF-3Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (234 aa)    
Predicted Functional Partners:
BRADO2120
Putative high-affinity branched-chain amino acid transport system permease protein livM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.976
livG-2
High-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind); Function of strongly homologous gene; transporter.
 
  
0.884
BRADO2119
Putative branched-chain amino acid ABC transporter, periplasmic substrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.881
BRADO2123
Putative transcriptional regulatory protein, MarR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.817
BRADO5595
Putative branched-chain amino acid ABC transporter (permease protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.807
BRADO5511
Putative branched-chain amino acid ABC transporter (permease protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.763
BRADO5596
Putative branched-chain amino acid ABC transporter (permease protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.757
BRADO6804
Putative branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; carrier; Belongs to the binding-protein-dependent transport system permease family.
  
 0.749
BRADO5852
Putative branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.747
BRADO0976
Branched-chain amino acid transport system permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.742
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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