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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BRADO2135Putative Beta-lactamase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (304 aa)    
Predicted Functional Partners:
BRADO4309
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.794
BRADO4511
Putative NUDIX hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.651
gcdH
glutaryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
   0.548
BRADO6094
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.515
BRADO0395
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.464
BRADO1189
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.448
BRADO2133
Putative GTP cyclohydrolase II, riboflavin biosynthesis; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
       0.434
BRADO1469
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.425
BRADO2137
Hypothetical protein; No homology to any previously reported sequences.
       0.422
BRADO2983
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.410
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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