STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BRADO2139ABC transporter periplasmic substrate binding protein; Function of strongly homologous gene; putative transporter. (401 aa)    
Predicted Functional Partners:
BRADO3734
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the binding-protein-dependent transport system permease family.
 
    0.840
BRADO3730
Putative branched-chain amino acid transport system ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.839
BRADO3733
Putative ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
    0.836
BRADO3731
Putative branched-chain amino acid transport system ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.807
BRADO2120
Putative high-affinity branched-chain amino acid transport system permease protein livM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.661
BRADO4581
Putative branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
    0.624
BRADO0970
ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.609
BRADO2653
Putative Branched-chain amino acid ABC tranpsorter, ATP binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.609
alkK
acyl-CoA synthetase; Function of strongly homologous gene; enzyme.
       0.463
BRADO4582
Putative branched-chain amino acid ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the binding-protein-dependent transport system permease family.
 
    0.453
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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