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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixR1Short-chain dehydrogenase; Function of strongly homologous gene; enzyme. (239 aa)    
Predicted Functional Partners:
BRADO3485
Putative dehdyrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.555
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.533
BRADO6919
Putative short-chain dehydrogenase/reductase (SDR); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.497
BRADO4879
Putative Short-chain dehydrogenase/reductase (modular); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
 
   0.461
BRADO1575
Putative carbohydrate kinase pfkB family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.455
BRADO2147
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.442
fixA
Protein fixA; Function of strongly homologous gene; carrier.
  
 
 0.441
fabD
Malonyl CoA-acyl carrier protein transacylase (MCT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.433
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
  
 0.431
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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