STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRADO2149Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (257 aa)    
Predicted Functional Partners:
BRADO2150
ECF family sigma factor; Function of strongly homologous gene; factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.896
BRADO1998
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.764
BRADO4334
Putative RNA polymerase sigma subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.607
BRADO1047
RNA polymerase sigma-E factor (Sigma-24) protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.606
BRADO2637
Putative RNA polymerase sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.606
BRADO1049
Putative response regulator receiver (CheY-like protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
 
 0.546
BRADO1500
RNA polymerase ECF-type sigma factor; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.543
BRADO2609
Putative RNA polymerase sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.543
BRADO2670
Putative RNA polymerase ECF-type sigma factor, possible carQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.543
BRADO4891
Putative RNA polymerase ECF-type sigma factor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.543
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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