STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
katNNon-heme manganese-containing catalase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (422 aa)    
Predicted Functional Partners:
BRADO5518
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.856
BRADO5074
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
0.832
BRADO3239
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.809
sodB
Superoxide dismutase, iron/manganese cofactor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.805
fdh
S-(hydroxymethyl)glutathione dehydrogenase (Glutathione-dependent formaldehyde dehydrogenase) (fdh); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.652
BRADO1380
Catalase, homologous to the Protein srpA precursor; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
  
  
 0.646
BRADO5823
Putative ATP-dependent DNA ligase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.634
BRADO5453
Putative oxidoreductase, NAD(P)-binding domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.551
BRADO3944
Putative oxidoreductase, NAD(P)-binding domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   
 0.541
ku
Conserved hypothetical protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
    0.511
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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