STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRADO2180Hypothetical protein; No homology to any previously reported sequences. (377 aa)    
Predicted Functional Partners:
BRADO2181
Hypothetical protein; No homology to any previously reported sequences.
 
     0.838
BRADO0837
Hypothetical protein; No homology to any previously reported sequences.
    
 0.770
BRADO3469
Hypothetical protein; No homology to any previously reported sequences.
  
 0.711
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
    
 0.690
BRADO2843
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
    
 
 0.667
BRADO6221
Putative Adenylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.663
rpmD
50S ribosomal subunit protein L30; Function of strongly homologous gene; structure.
   
  0.661
BRADO2676
Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
   
   0.659
BRADO6220
Putative Adenylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.653
BRADO5105
Putative transport transmembrane protein (aquaporin-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.645
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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