STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BRADO2186Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (279 aa)    
Predicted Functional Partners:
BRADO6285
Putative outer membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
    
 
 0.548
BRADO6543
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.546
BRADO1925
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
    
 
 0.515
BRADO7033
Putative Glycosyl transferase, group 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.491
BRADO3946
Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
   
 
 0.474
fcl
Bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
    0.462
gmd
GDP-D-mannose dehydratase, NAD(P)-binding, colanic acid synthesis; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
    0.462
ftsK
DNA translocase; Function of homologous gene experimentally demonstrated in an other organism; phenotype.
    
 
 0.457
BRADO1389
Hypothetical protein; No homology to any previously reported sequences.
    
 
 0.457
BRADO6383
Hypothetical protein; No homology to any previously reported sequences.
    
 
 0.457
Your Current Organism:
Bradyrhizobium sp. ORS278
NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278
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