BRADO2425 protein (Bradyrhizobium sp. ORS278)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

BRADO2425

Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (621 aa)

Predicted Functional Partners:

BRADO0919

0.521

BRADO2426

0.488

bioB

0.438

BRADO4093

0.437

BRADO2565

0.428

BRADO6726

0.400

Your Current Organism:

Bradyrhizobium sp. ORS278

NCBI taxonomy Id: 114615
Other names: B. sp. ORS 278, Bradyrhizobium sp. ORS 278

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRADO0919	BRADO2425	BRADO0919	BRADO2425	Hypothetical protein; No homology to any previously reported sequences.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.521
BRADO0919	BRADO2565	BRADO0919	BRADO2565	Hypothetical protein; No homology to any previously reported sequences.	Conserved hypothetical proteins; Homologs of previously reported genes of unknown function.	0.410
BRADO0919	BRADO4093	BRADO0919	BRADO4093	Hypothetical protein; No homology to any previously reported sequences.	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.581
BRADO0919	BRADO6726	BRADO0919	BRADO6726	Hypothetical protein; No homology to any previously reported sequences.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.456
BRADO2425	BRADO0919	BRADO2425	BRADO0919	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Hypothetical protein; No homology to any previously reported sequences.	0.521
BRADO2425	BRADO2426	BRADO2425	BRADO2426	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative diguanylate cyclase (GGDEF); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	0.488
BRADO2425	BRADO2565	BRADO2425	BRADO2565	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical proteins; Homologs of previously reported genes of unknown function.	0.428
BRADO2425	BRADO4093	BRADO2425	BRADO4093	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.437
BRADO2425	BRADO6726	BRADO2425	BRADO6726	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.400
BRADO2425	bioB	BRADO2425	BRADO2424	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Biotin synthetase (Biotin synthase); Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.	0.438
BRADO2426	BRADO2425	BRADO2426	BRADO2425	Putative diguanylate cyclase (GGDEF); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.488
BRADO2565	BRADO0919	BRADO2565	BRADO0919	Conserved hypothetical proteins; Homologs of previously reported genes of unknown function.	Hypothetical protein; No homology to any previously reported sequences.	0.410
BRADO2565	BRADO2425	BRADO2565	BRADO2425	Conserved hypothetical proteins; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.428
BRADO2565	BRADO4093	BRADO2565	BRADO4093	Conserved hypothetical proteins; Homologs of previously reported genes of unknown function.	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.507
BRADO2565	BRADO6726	BRADO2565	BRADO6726	Conserved hypothetical proteins; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.628
BRADO4093	BRADO0919	BRADO4093	BRADO0919	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Hypothetical protein; No homology to any previously reported sequences.	0.581
BRADO4093	BRADO2425	BRADO4093	BRADO2425	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.437
BRADO4093	BRADO2565	BRADO4093	BRADO2565	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved hypothetical proteins; Homologs of previously reported genes of unknown function.	0.507
BRADO4093	BRADO6726	BRADO4093	BRADO6726	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.535
BRADO6726	BRADO0919	BRADO6726	BRADO0919	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Hypothetical protein; No homology to any previously reported sequences.	0.456