STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQD56984.1Carbamoyltransferase HypF; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)    
Predicted Functional Partners:
BM536_006425
Hydrogenase formation protein HypD; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.997
OQD56985.1
Ni/Fe hydrogenase formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.982
hypA
Hydrogenase maturation nickel metallochaperone HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
   
 0.981
OQD56983.1
Hydrogenase accessory protein HypB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.978
OQD56981.1
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.949
OQD56977.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.919
OQD56976.1
Hydrogenase expression protein HypE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.916
BM536_027030
dTDP-glucose 4,6-dehydratase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.745
OQD56975.1
Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.685
OQD56980.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.678
Your Current Organism:
Streptomyces phaeoluteigriseus
NCBI taxonomy Id: 114686
Other names: DSM 41896, ISP 5182, NRRL ISP-5182, S. phaeoluteigriseus, Streptomyces phaeoluteigriseus Goodfellow et al. 2008, Streptomyces sp. NRRL 5182
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.