STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQD54158.1D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (269 aa)    
Predicted Functional Partners:
ddl
D-alanine--D-alanine ligase A; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.906
BM536_000790
GNAT family N-acetyltransferase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.900
BM536_018945
Glycosyl hydrolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.829
OQD54159.1
benzoylsuccinyl-CoA thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
OQD55034.1
Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
OQD54160.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.694
OQD54741.1
Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.633
OQD51954.1
Hypothetical protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.611
OQD54156.1
acetoacetate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
OQD52759.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.400
Your Current Organism:
Streptomyces phaeoluteigriseus
NCBI taxonomy Id: 114686
Other names: DSM 41896, ISP 5182, NRRL ISP-5182, S. phaeoluteigriseus, Streptomyces phaeoluteigriseus Goodfellow et al. 2008, Streptomyces sp. NRRL 5182
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