STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speABiosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (693 aa)    
Predicted Functional Partners:
speB1
Agmatinase; Sly1000130; Belongs to the arginase family.
 
 
 0.939
speB2
Agmatinase; Sly1021870; Belongs to the arginase family.
  
 
 0.920
speA-2
Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
  
  
 
0.902
argH
Argininosuccinate lyase; Sly1025990.
     
 0.823
gpmB
Phosphoglycerate mutase; Sly3001330; Belongs to the phosphoglycerate mutase family.
      
 0.787
pstA
Phosphate transport system permease protein PstA; Sly1002990.
      
 0.784
pstA-2
Phosphate transport system permease protein PstA; Sly1013460.
      
 0.784
phaB
Acetoacetyl-CoA reductase; Sly1026610.
      
 0.514
phaA
3-ketoacyl-CoA thiolase / Acetyl-CoA acetyltransferase; Sly1026600; Belongs to the thiolase-like superfamily. Thiolase family.
      
 0.514
AIE72692.1
Hypothetical protein; Sly1002840.
       0.419
Your Current Organism:
Synechocystis sp. PCC6714
NCBI taxonomy Id: 1147
Other names: Aphanocapsa sp. (strain 5.3A), Aphanocapsa sp. 5-3A, Aphanocapsa sp. 5.3A, S. sp. PCC 6714, Synechocystis sp. (ATCC 27178), Synechocystis sp. (PCC 6714), Synechocystis sp. (strain PCC 6714), Synechocystis sp. ATCC 27178, Synechocystis sp. PCC 6714, Synechocystis sp. SAG 92.79, Synechocystis sp. UTCC 98, Synechocystis sp. UTEX 2470
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.