STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tilStRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (369 aa)    
Predicted Functional Partners:
BAST_1244
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
 
  
 0.964
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
 
   
 0.892
BAST_1246
D-alanyl-D-alanine carboxypeptidase.
     
 0.854
BAST_1247
Hypothetical protein.
  
    0.771
BAST_1248
Transporter, probably The KirBac3.1 K+ channel; A dimer of dimers with gating visualized by atomic force microscopy) (regulated by binding lipids, G-proteins, nucleotides, and ions (H+, Ca2+, and Mg2+).
       0.762
BAST_1249
Putative glycosyl transferase, group 2 family.
       0.762
BAST_1250
Putative membrane protein.
       0.762
BAST_1242
Putative aldolase-pyrophosphokinase.
  
    0.730
BAST_1241
Hypothetical protein.
       0.723
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
 
 0.712
Your Current Organism:
Bifidobacterium asteroides
NCBI taxonomy Id: 1147128
Other names: B. asteroides PRL2011, Bifidobacterium asteroides PRL2011, Bifidobacterium asteroides str. PRL2011, Bifidobacterium asteroides strain PRL2011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.