STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
morRMorR protein; ORF_ID:slr1416. (314 aa)    
Predicted Functional Partners:
slr2013
ORF_ID:slr2013; unknown protein.
  
 0.811
sphX
SphX protein precursor; May be involved in the system for phosphate transport across the cytoplasmic membrane.
      
 0.752
lexA
SOS function regulatory protein; A probable transcription regulator, probably involved in carbon metabolism. Binds and probably regulates expression of bidirectional hydrogenase (hoxEFUHY), probably activates its transcription. A possible regulator of redox-responsive genes. Binds 2 direct repeats of the DNA with sequence 5'-CTA-N(9)-CTA-3' in the upstream region of both its own gene (includes the transcription start site) and crhR (includes the initiation codon) in a sequence-specific manner; does not bind crhR RNA. Binds to the crhR gene, represses its transcription. Belongs to the p [...]
   
  
 0.708
sufA
Iron transport protein; Plays an important role in protecting the acceptor side of photosystem II (PSII) against oxidative damage, especially under iron- limiting growth conditions (Probable). The differing subcellular locations of futA1 (predominantly thylakoid lumen) and futA2 (predominantly periplasmic) suggest they may fulfill different roles.
      
 0.680
nrtA
Nitrate transport 45kD protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport (By similarity). NrtA is the substrate-binding protein. Binds nitrate. Belongs to the CmpA/NrtA family.
      
 0.680
slr1415
ORF_ID:slr1415; unknown protein.
       0.541
cad
Lysine decarboxylase; ORF_ID:sll1683.
   
 
 0.515
slr1417
ORF_ID:slr1417; hypothetical protein; Belongs to the HesB/IscA family. Ycf83 subfamily.
       0.447
slr1414
Sensory transduction histidine kinase; ORF_ID:slr1414.
       0.443
me
Malic enzyme; ORF_ID:slr0721.
  
    0.415
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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