STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmK2Carbon dioxide-concentrating mechanism protein CcmK homolog 2; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered. (103 aa)    
Predicted Functional Partners:
ccmL
Carbon dioxide concentrating mechanism protein; ORF_ID:sll1030; To E.coli and S.typhimurium CchB.
 
 
 
 0.998
ccmM
Carbon dioxide concentrating mechanism protein; ORF_ID:sll1031.
   
 
 0.971
ccmN
CcmN protein; ORF_ID:sll1032; hypothetical protein.
     
 0.955
rbcL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily.
     
 0.878
rbcS
Ribulose bisphosphate carboxylase small subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO small chain family.
     
 0.793
ccmK
Carbon dioxide concentrating mechanism protein; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered.
 
 
 
0.722
slr0169
ORF_ID:slr0169; unknown protein.
 
 
 
 0.682
ccmK-4
Carbon dioxide concentrating mechanism protein; ORF_ID:slr0436.
 
 
 
0.589
rbcX
Unknown function; ORF_ID:slr0011.
      
 0.573
sll0484
ABC transporter; ORF_ID:sll0484.
      
 0.550
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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