STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1045Probable ABC transporter permease protein slr1045; Could be part of an ABC transporter complex; Belongs to the MlaE permease family. (263 aa)    
Predicted Functional Partners:
sll1041
ABC transporter; ORF_ID:sll1041.
 0.999
sll1001
ABC transporter; ORF_ID:sll1001.
 0.999
ycf22
Ycf22 protein; ORF_ID:sll1002; hypothetical protein.
 
 0.983
sll0752
ORF_ID:sll0752; unknown protein.
  
 0.951
slr1046
Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
     
 0.923
slr1344
ORF_ID:slr1344; hypothetical protein; Belongs to the MlaE permease family.
  
  
0.905
ycf22-2
Ycf22 protein; ORF_ID:sll0751; hypothetical protein.
 
 
 0.860
slr1113
ABC transporter; ORF_ID:slr1113.
    
 0.791
slr1762
ORF_ID:slr1762; unknown protein.
   
  
 0.783
thiE
Thiamin biosynthetic bifunctional enzyme; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
   
  
 0.782
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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