Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ETR1 | cobN | gene:10498257 | gene:10498256 | Ethylene response sensor protein; ORF_ID:slr1212. | CobN protein; ORF_ID:slr1211. | 0.536 |
ETR1 | slr1208 | gene:10498257 | gene:10498253 | Ethylene response sensor protein; ORF_ID:slr1212. | Short-chain alcohol dehydrogenase family; ORF_ID:slr1208. | 0.570 |
ETR1 | slr1209 | gene:10498257 | gene:10498254 | Ethylene response sensor protein; ORF_ID:slr1212. | ORF_ID:slr1209; unknown protein. | 0.523 |
ETR1 | slr1210 | gene:10498257 | gene:10498255 | Ethylene response sensor protein; ORF_ID:slr1212. | ORF_ID:slr1210; unknown protein. | 0.523 |
ETR1 | slr1213 | gene:10498257 | gene:10498258 | Ethylene response sensor protein; ORF_ID:slr1212. | AraC subfamily; ORF_ID:slr1213. | 0.995 |
cobN | ETR1 | gene:10498256 | gene:10498257 | CobN protein; ORF_ID:slr1211. | Ethylene response sensor protein; ORF_ID:slr1212. | 0.536 |
cobN | slr1208 | gene:10498256 | gene:10498253 | CobN protein; ORF_ID:slr1211. | Short-chain alcohol dehydrogenase family; ORF_ID:slr1208. | 0.730 |
cobN | slr1209 | gene:10498256 | gene:10498254 | CobN protein; ORF_ID:slr1211. | ORF_ID:slr1209; unknown protein. | 0.752 |
cobN | slr1210 | gene:10498256 | gene:10498255 | CobN protein; ORF_ID:slr1211. | ORF_ID:slr1210; unknown protein. | 0.752 |
cobN | slr1213 | gene:10498256 | gene:10498258 | CobN protein; ORF_ID:slr1211. | AraC subfamily; ORF_ID:slr1213. | 0.438 |
cobN | ssr2016 | gene:10498256 | gene:10498252 | CobN protein; ORF_ID:slr1211. | ORF_ID:ssr2016; unknown protein. | 0.402 |
slr1208 | ETR1 | gene:10498253 | gene:10498257 | Short-chain alcohol dehydrogenase family; ORF_ID:slr1208. | Ethylene response sensor protein; ORF_ID:slr1212. | 0.570 |
slr1208 | cobN | gene:10498253 | gene:10498256 | Short-chain alcohol dehydrogenase family; ORF_ID:slr1208. | CobN protein; ORF_ID:slr1211. | 0.730 |
slr1208 | slr1209 | gene:10498253 | gene:10498254 | Short-chain alcohol dehydrogenase family; ORF_ID:slr1208. | ORF_ID:slr1209; unknown protein. | 0.752 |
slr1208 | slr1210 | gene:10498253 | gene:10498255 | Short-chain alcohol dehydrogenase family; ORF_ID:slr1208. | ORF_ID:slr1210; unknown protein. | 0.752 |
slr1208 | slr1213 | gene:10498253 | gene:10498258 | Short-chain alcohol dehydrogenase family; ORF_ID:slr1208. | AraC subfamily; ORF_ID:slr1213. | 0.480 |
slr1208 | ssr2016 | gene:10498253 | gene:10498252 | Short-chain alcohol dehydrogenase family; ORF_ID:slr1208. | ORF_ID:ssr2016; unknown protein. | 0.521 |
slr1209 | ETR1 | gene:10498254 | gene:10498257 | ORF_ID:slr1209; unknown protein. | Ethylene response sensor protein; ORF_ID:slr1212. | 0.523 |
slr1209 | cobN | gene:10498254 | gene:10498256 | ORF_ID:slr1209; unknown protein. | CobN protein; ORF_ID:slr1211. | 0.752 |
slr1209 | slr1208 | gene:10498254 | gene:10498253 | ORF_ID:slr1209; unknown protein. | Short-chain alcohol dehydrogenase family; ORF_ID:slr1208. | 0.752 |
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