STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1821Putative zinc metalloprotease slr1821; ORF_ID:slr1821; hypothetical protein; Belongs to the peptidase M50B family. (366 aa)    
Predicted Functional Partners:
sll0862
ORF_ID:sll0862; unknown protein.
      
 0.979
slr0643
ORF_ID:slr0643; unknown protein.
      
 0.979
sll0528
Putative zinc metalloprotease sll0528; ORF_ID:sll0528; hypothetical protein; Belongs to the peptidase M50B family.
     
 0.905
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
     
 0.809
IAP75
Chloroplast import-associated channel IAP75; ORF_ID:slr1227.
 
  
 0.702
sll0506
Isoprenyl transferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
  
 0.650
ctpA
Carboxyl-terminal processing protease; Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II (PSII). This proteolytic processing is necessary to allow the light-driven assembly of the oxygen-evolving cluster (a tetranuclear manganese), which is responsible for photosynthetic water oxidation; Belongs to the peptidase S41A family.
  
  
 0.586
lepB
Leader peptidase I; ORF_ID:sll0716; Belongs to the peptidase S26 family.
 
  
 0.578
lepB-2
Leader peptidase I; ORF_ID:slr1377; Belongs to the peptidase S26 family.
 
  
 0.575
ctpB
Carboxyl-terminal protease; ORF_ID:slr0257; Belongs to the peptidase S41A family.
  
  
 0.568
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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