Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
pma1 | sll0615 | gene:10498766 | gene:10499849 | Cation-transporting ATPase; Could mediate calcium influx. | Transmembrane protein FT27; ORF_ID:sll0615. | 0.739 |
pma1 | slr1257 | gene:10498766 | gene:10498720 | Cation-transporting ATPase; Could mediate calcium influx. | ORF_ID:slr1257; unknown protein. | 0.679 |
secA | sll0615 | gene:10499848 | gene:10499849 | Preprotein translocase SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | Transmembrane protein FT27; ORF_ID:sll0615. | 0.449 |
sll0615 | pma1 | gene:10499849 | gene:10498766 | Transmembrane protein FT27; ORF_ID:sll0615. | Cation-transporting ATPase; Could mediate calcium influx. | 0.739 |
sll0615 | secA | gene:10499849 | gene:10499848 | Transmembrane protein FT27; ORF_ID:sll0615. | Preprotein translocase SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.449 |
sll0615 | sll1571 | gene:10499849 | gene:10498106 | Transmembrane protein FT27; ORF_ID:sll0615. | ORF_ID:sll1571; unknown protein. | 0.511 |
sll0615 | slr0798 | gene:10499849 | gene:10500211 | Transmembrane protein FT27; ORF_ID:sll0615. | Unknown protein; ORF_ID:slr0798; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily. | 0.677 |
sll0615 | slr1257 | gene:10499849 | gene:10498720 | Transmembrane protein FT27; ORF_ID:sll0615. | ORF_ID:slr1257; unknown protein. | 0.702 |
sll0615 | slr1415 | gene:10499849 | gene:10497599 | Transmembrane protein FT27; ORF_ID:sll0615. | ORF_ID:slr1415; unknown protein. | 0.445 |
sll0615 | slr1950 | gene:10499849 | gene:10499499 | Transmembrane protein FT27; ORF_ID:sll0615. | Cation-transporting ATPase; ORF_ID:slr1950; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily. | 0.649 |
sll0615 | thiE | gene:10499849 | gene:10497843 | Transmembrane protein FT27; ORF_ID:sll0615. | Thiamin biosynthetic bifunctional enzyme; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.572 |
sll1571 | sll0615 | gene:10498106 | gene:10499849 | ORF_ID:sll1571; unknown protein. | Transmembrane protein FT27; ORF_ID:sll0615. | 0.511 |
sll1571 | slr1415 | gene:10498106 | gene:10497599 | ORF_ID:sll1571; unknown protein. | ORF_ID:slr1415; unknown protein. | 0.775 |
slr0798 | sll0615 | gene:10500211 | gene:10499849 | Unknown protein; ORF_ID:slr0798; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily. | Transmembrane protein FT27; ORF_ID:sll0615. | 0.677 |
slr0798 | slr1257 | gene:10500211 | gene:10498720 | Unknown protein; ORF_ID:slr0798; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily. | ORF_ID:slr1257; unknown protein. | 0.627 |
slr1257 | pma1 | gene:10498720 | gene:10498766 | ORF_ID:slr1257; unknown protein. | Cation-transporting ATPase; Could mediate calcium influx. | 0.679 |
slr1257 | sll0615 | gene:10498720 | gene:10499849 | ORF_ID:slr1257; unknown protein. | Transmembrane protein FT27; ORF_ID:sll0615. | 0.702 |
slr1257 | slr0798 | gene:10498720 | gene:10500211 | ORF_ID:slr1257; unknown protein. | Unknown protein; ORF_ID:slr0798; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily. | 0.627 |
slr1257 | slr1950 | gene:10498720 | gene:10499499 | ORF_ID:slr1257; unknown protein. | Cation-transporting ATPase; ORF_ID:slr1950; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily. | 0.623 |
slr1415 | sll0615 | gene:10497599 | gene:10499849 | ORF_ID:slr1415; unknown protein. | Transmembrane protein FT27; ORF_ID:sll0615. | 0.445 |
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