slr0513 protein (Synechocystis sp. PCC6803) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

slr0513

Periplasmic iron-binding protein; Probably part of a periplasmic ABC transporter complex futA1A2BC (TC 3.A.1.10.2) involved in Fe(3+) ion import (ferric iron). This protein and futA1 (slr1295) are subunit proteins that have redundant or overlapping substrate-binding functions (Probable). The differing subcellular locations of futA1 (predominantly thylakoid lumen) and futA2 (predominantly periplasmic) suggest they may fulfill different roles. Plays an undefined role in copper supply to thylakoid proteins. (346 aa)

Predicted Functional Partners:

hitB

0.982

sll1878

0.981

sll0238

0.965

sll0237

0.928

sll0240

0.910

sufA

0.908

fecB

0.731

fecB-2

0.691

feoB

0.691

sll1550

0.682

Your Current Organism:

Synechocystis sp. PCC6803

NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fecB	feoB	gene:10497448	gene:10498071	iron(III) dicitrate transport system permease protein; ORF_ID:slr1319.	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	0.425
fecB	slr0513	gene:10497448	gene:10500095	iron(III) dicitrate transport system permease protein; ORF_ID:slr1319.	Periplasmic iron-binding protein; Probably part of a periplasmic ABC transporter complex futA1A2BC (TC 3.A.1.10.2) involved in Fe(3+) ion import (ferric iron). This protein and futA1 (slr1295) are subunit proteins that have redundant or overlapping substrate-binding functions (Probable). The differing subcellular locations of futA1 (predominantly thylakoid lumen) and futA2 (predominantly periplasmic) suggest they may fulfill different roles. Plays an undefined role in copper supply to thylakoid proteins.	0.731
fecB	sufA	gene:10497448	gene:10497700	iron(III) dicitrate transport system permease protein; ORF_ID:slr1319.	Iron transport protein; Plays an important role in protecting the acceptor side of photosystem II (PSII) against oxidative damage, especially under iron- limiting growth conditions (Probable). The differing subcellular locations of futA1 (predominantly thylakoid lumen) and futA2 (predominantly periplasmic) suggest they may fulfill different roles.	0.728
fecB-2	slr0513	gene:10497465	gene:10500095	iron(III) dicitrate-binding periplasmic protein; ORF_ID:slr1491.	Periplasmic iron-binding protein; Probably part of a periplasmic ABC transporter complex futA1A2BC (TC 3.A.1.10.2) involved in Fe(3+) ion import (ferric iron). This protein and futA1 (slr1295) are subunit proteins that have redundant or overlapping substrate-binding functions (Probable). The differing subcellular locations of futA1 (predominantly thylakoid lumen) and futA2 (predominantly periplasmic) suggest they may fulfill different roles. Plays an undefined role in copper supply to thylakoid proteins.	0.691
fecB-2	sufA	gene:10497465	gene:10497700	iron(III) dicitrate-binding periplasmic protein; ORF_ID:slr1491.	Iron transport protein; Plays an important role in protecting the acceptor side of photosystem II (PSII) against oxidative damage, especially under iron- limiting growth conditions (Probable). The differing subcellular locations of futA1 (predominantly thylakoid lumen) and futA2 (predominantly periplasmic) suggest they may fulfill different roles.	0.622
feoB	fecB	gene:10498071	gene:10497448	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	iron(III) dicitrate transport system permease protein; ORF_ID:slr1319.	0.425
feoB	hitB	gene:10498071	gene:10499521	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	Iron utilization protein; ORF_ID:slr0327.	0.713
feoB	sll0240	gene:10498071	gene:10498831	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	ABC transporter; ORF_ID:sll0240.	0.592
feoB	sll1878	gene:10498071	gene:10499086	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	ABC transporter; ORF_ID:sll1878; Belongs to the ABC transporter superfamily.	0.423
feoB	slr0513	gene:10498071	gene:10500095	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	Periplasmic iron-binding protein; Probably part of a periplasmic ABC transporter complex futA1A2BC (TC 3.A.1.10.2) involved in Fe(3+) ion import (ferric iron). This protein and futA1 (slr1295) are subunit proteins that have redundant or overlapping substrate-binding functions (Probable). The differing subcellular locations of futA1 (predominantly thylakoid lumen) and futA2 (predominantly periplasmic) suggest they may fulfill different roles. Plays an undefined role in copper supply to thylakoid proteins.	0.691
feoB	sufA	gene:10498071	gene:10497700	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	Iron transport protein; Plays an important role in protecting the acceptor side of photosystem II (PSII) against oxidative damage, especially under iron- limiting growth conditions (Probable). The differing subcellular locations of futA1 (predominantly thylakoid lumen) and futA2 (predominantly periplasmic) suggest they may fulfill different roles.	0.685
hitB	feoB	gene:10499521	gene:10498071	Iron utilization protein; ORF_ID:slr0327.	Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.	0.713
hitB	sll0237	gene:10499521	gene:10498833	Iron utilization protein; ORF_ID:slr0327.	ORF_ID:sll0237; unknown protein.	0.976
hitB	sll0238	gene:10499521	gene:10498832	Iron utilization protein; ORF_ID:slr0327.	ORF_ID:sll0238; unknown protein.	0.923
hitB	sll0240	gene:10499521	gene:10498831	Iron utilization protein; ORF_ID:slr0327.	ABC transporter; ORF_ID:sll0240.	0.908
hitB	sll1878	gene:10499521	gene:10499086	Iron utilization protein; ORF_ID:slr0327.	ABC transporter; ORF_ID:sll1878; Belongs to the ABC transporter superfamily.	0.953
hitB	slr0513	gene:10499521	gene:10500095	Iron utilization protein; ORF_ID:slr0327.	Periplasmic iron-binding protein; Probably part of a periplasmic ABC transporter complex futA1A2BC (TC 3.A.1.10.2) involved in Fe(3+) ion import (ferric iron). This protein and futA1 (slr1295) are subunit proteins that have redundant or overlapping substrate-binding functions (Probable). The differing subcellular locations of futA1 (predominantly thylakoid lumen) and futA2 (predominantly periplasmic) suggest they may fulfill different roles. Plays an undefined role in copper supply to thylakoid proteins.	0.982
hitB	sufA	gene:10499521	gene:10497700	Iron utilization protein; ORF_ID:slr0327.	Iron transport protein; Plays an important role in protecting the acceptor side of photosystem II (PSII) against oxidative damage, especially under iron- limiting growth conditions (Probable). The differing subcellular locations of futA1 (predominantly thylakoid lumen) and futA2 (predominantly periplasmic) suggest they may fulfill different roles.	0.982
sll0237	hitB	gene:10498833	gene:10499521	ORF_ID:sll0237; unknown protein.	Iron utilization protein; ORF_ID:slr0327.	0.976
sll0237	sll0238	gene:10498833	gene:10498832	ORF_ID:sll0237; unknown protein.	ORF_ID:sll0238; unknown protein.	0.995

page 1 of 4

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About