Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
cbiA | ski2 | gene:10497883 | gene:10500576 | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. | Antiviral protein; ORF_ID:slr0451. | 0.414 |
ski2 | cbiA | gene:10500576 | gene:10497883 | Antiviral protein; ORF_ID:slr0451. | Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family. | 0.414 |
ski2 | sll0031 | gene:10500576 | gene:10500303 | Antiviral protein; ORF_ID:slr0451. | ORF_ID:sll0031; unknown protein. | 0.454 |
ski2 | ycf23 | gene:10500576 | gene:10497949 | Antiviral protein; ORF_ID:slr0451. | Ycf23 protein; ORF_ID:slr2032; hypothetical protein. | 0.436 |
ski2 | ycf47 | gene:10500576 | gene:10499495 | Antiviral protein; ORF_ID:slr0451. | Protein-export membrane protein SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.407 |
sll0031 | ski2 | gene:10500303 | gene:10500576 | ORF_ID:sll0031; unknown protein. | Antiviral protein; ORF_ID:slr0451. | 0.454 |
sll0031 | ycf23 | gene:10500303 | gene:10497949 | ORF_ID:sll0031; unknown protein. | Ycf23 protein; ORF_ID:slr2032; hypothetical protein. | 0.773 |
ycf23 | ski2 | gene:10497949 | gene:10500576 | Ycf23 protein; ORF_ID:slr2032; hypothetical protein. | Antiviral protein; ORF_ID:slr0451. | 0.436 |
ycf23 | sll0031 | gene:10497949 | gene:10500303 | Ycf23 protein; ORF_ID:slr2032; hypothetical protein. | ORF_ID:sll0031; unknown protein. | 0.773 |
ycf23 | ycf47 | gene:10497949 | gene:10499495 | Ycf23 protein; ORF_ID:slr2032; hypothetical protein. | Protein-export membrane protein SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.463 |
ycf47 | ski2 | gene:10499495 | gene:10500576 | Protein-export membrane protein SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Antiviral protein; ORF_ID:slr0451. | 0.407 |
ycf47 | ycf23 | gene:10499495 | gene:10497949 | Protein-export membrane protein SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Ycf23 protein; ORF_ID:slr2032; hypothetical protein. | 0.463 |