ssr1853 protein (Synechocystis sp. PCC6803) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ssr1853

ORF_ID:ssr1853; unknown protein. (95 aa)

Predicted Functional Partners:

ssr3402

0.953

slr1339

0.953

slr0179

0.786

slr0476

0.786

sll0167

0.783

slr1260

0.780

fus-3

0.706

slr1403

0.697

slr0420

0.680

pyrR

0.680

Your Current Organism:

Synechocystis sp. PCC6803

NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fus-3	pyrR	gene:10500024	gene:10499906	Elongation factor EF-G; ORF_ID:sll0830; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	Pyrimidine operon regulatory protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.	0.681
fus-3	sll0167	gene:10500024	gene:10499554	Elongation factor EF-G; ORF_ID:sll0830; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	ORF_ID:sll0167; unknown protein.	0.712
fus-3	slr0179	gene:10500024	gene:10499558	Elongation factor EF-G; ORF_ID:sll0830; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	ORF_ID:slr0179; unknown protein.	0.802
fus-3	slr0420	gene:10500024	gene:10499893	Elongation factor EF-G; ORF_ID:sll0830; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	ORF_ID:slr0420; unknown protein.	0.675
fus-3	slr0476	gene:10500024	gene:10499810	Elongation factor EF-G; ORF_ID:sll0830; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	ORF_ID:slr0476; unknown protein.	0.765
fus-3	slr1260	gene:10500024	gene:10498723	Elongation factor EF-G; ORF_ID:sll0830; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	ORF_ID:slr1260; hypothetical protein.	0.689
fus-3	slr1403	gene:10500024	gene:10498501	Elongation factor EF-G; ORF_ID:sll0830; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	ORF_ID:slr1403; integrin alpha- and beta4- subunit domain homologue.	0.680
fus-3	ssr1853	gene:10500024	gene:10497496	Elongation factor EF-G; ORF_ID:sll0830; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	ORF_ID:ssr1853; unknown protein.	0.706
pyrR	fus-3	gene:10499906	gene:10500024	Pyrimidine operon regulatory protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.	Elongation factor EF-G; ORF_ID:sll0830; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	0.681
pyrR	sll0167	gene:10499906	gene:10499554	Pyrimidine operon regulatory protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.	ORF_ID:sll0167; unknown protein.	0.680
pyrR	slr0179	gene:10499906	gene:10499558	Pyrimidine operon regulatory protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.	ORF_ID:slr0179; unknown protein.	0.680
pyrR	slr0420	gene:10499906	gene:10499893	Pyrimidine operon regulatory protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.	ORF_ID:slr0420; unknown protein.	0.544
pyrR	slr0476	gene:10499906	gene:10499810	Pyrimidine operon regulatory protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.	ORF_ID:slr0476; unknown protein.	0.680
pyrR	slr1260	gene:10499906	gene:10498723	Pyrimidine operon regulatory protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.	ORF_ID:slr1260; hypothetical protein.	0.679
pyrR	slr1403	gene:10499906	gene:10498501	Pyrimidine operon regulatory protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.	ORF_ID:slr1403; integrin alpha- and beta4- subunit domain homologue.	0.675
pyrR	ssr1853	gene:10499906	gene:10497496	Pyrimidine operon regulatory protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.	ORF_ID:ssr1853; unknown protein.	0.680
sll0167	fus-3	gene:10499554	gene:10500024	ORF_ID:sll0167; unknown protein.	Elongation factor EF-G; ORF_ID:sll0830; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.	0.712
sll0167	pyrR	gene:10499554	gene:10499906	ORF_ID:sll0167; unknown protein.	Pyrimidine operon regulatory protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines.	0.680
sll0167	slr0179	gene:10499554	gene:10499558	ORF_ID:sll0167; unknown protein.	ORF_ID:slr0179; unknown protein.	0.787
sll0167	slr0420	gene:10499554	gene:10499893	ORF_ID:sll0167; unknown protein.	ORF_ID:slr0420; unknown protein.	0.680

page 1 of 4

Server load: low (12%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2024

Credits

Access

Info

About