STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbBABC transporter; ORF_ID:slr0982. (430 aa)    
Predicted Functional Partners:
slr0977
ABC transporter; ORF_ID:slr0977.
 
 0.989
rfbA-2
Integral membrane O-antigen translocator protein; ORF_ID:sll0574.
 
 0.986
kpsM
Polysialic acid transport protein; ORF_ID:slr2107.
 
 0.985
kpsT
Polysialic acid transport ATP-binding protein; ORF_ID:slr2108.
  
  
 
0.915
rfbB-4
ATP-binding protein; ORF_ID:sll0575.
  
  
 
0.913
rps15
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
      
 0.899
rfbG
CDP-glucose-4,6-dehydratase; ORF_ID:slr0984.
  
    0.777
rfbF
alpha-D-glucose-1-phosphate cytidylyltransferase; ORF_ID:slr0983.
       0.774
rfbC
dTDP-6-deoxy-L-mannose-dehydrogenase; ORF_ID:slr0985.
     
 0.733
slr1610
ORF_ID:slr1610; hypothetical protein.
       0.719
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.