STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcpAMethyl-accepting chemotaxis protein; ORF_ID:slr1044. (869 aa)    
Predicted Functional Partners:
slr0322
CheA like protein; ORF_ID:slr0322.
 
 0.999
slr1043
ORF_ID:slr1043; unknown protein.
 
 0.989
sll1296
CheA like protein; ORF_ID:sll1296.
 
 
 0.986
sll0043
CheA like protein; ORF_ID:sll0043.
 
 
 0.986
slr1617
ORF_ID:slr1617; unknown protein.
      
 0.979
slr1042
CheY subfamily; ORF_ID:slr1042.
  
  0.955
pilJ
PilJ protein; ORF_ID:sll1294; methyl-accepting chemotaxis protein (MCP) homologue.
  
 
0.948
sll1291
PatA subfamily; ORF_ID:sll1291.
 
 0.942
slr1214
PatA subfamily; ORF_ID:slr1214.
 
 
  0.939
slr1041
PatA subfamily; ORF_ID:slr1041.
  
  0.937
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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