Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
sll0984 | slr1037 | gene:10498038 | gene:10498039 | ORF_ID:sll0984; unknown protein. | CheY subfamily; ORF_ID:slr1037. | 0.835 |
sll0984 | slr1393 | gene:10498038 | gene:10498073 | ORF_ID:sll0984; unknown protein. | Sensory transduction histidine kinase; ORF_ID:slr1393. | 0.680 |
sll1124 | sll1905 | gene:10498231 | gene:10498754 | Sensory transduction histidine kinase; ORF_ID:sll1124. | Hybrid sensory kinase; ORF_ID:sll1905. | 0.975 |
sll1124 | slr0222 | gene:10498231 | gene:10499721 | Sensory transduction histidine kinase; ORF_ID:sll1124. | Hybrid sensory kinase; ORF_ID:slr0222. | 0.763 |
sll1124 | slr1037 | gene:10498231 | gene:10498039 | Sensory transduction histidine kinase; ORF_ID:sll1124. | CheY subfamily; ORF_ID:slr1037. | 0.844 |
sll1124 | slr1393 | gene:10498231 | gene:10498073 | Sensory transduction histidine kinase; ORF_ID:sll1124. | Sensory transduction histidine kinase; ORF_ID:slr1393. | 0.685 |
sll1124 | slr1414 | gene:10498231 | gene:10497598 | Sensory transduction histidine kinase; ORF_ID:sll1124. | Sensory transduction histidine kinase; ORF_ID:slr1414. | 0.634 |
sll1124 | slr1759 | gene:10498231 | gene:10497917 | Sensory transduction histidine kinase; ORF_ID:sll1124. | Hybrid sensory kinase; ORF_ID:slr1759. | 0.974 |
sll1124 | slr2104 | gene:10498231 | gene:10498868 | Sensory transduction histidine kinase; ORF_ID:sll1124. | Hybrid sensory kinase; ORF_ID:slr2104. | 0.966 |
sll1124 | sphS | gene:10498231 | gene:10499583 | Sensory transduction histidine kinase; ORF_ID:sll1124. | Regulation of the phosphate regulon; ORF_ID:sll0337. | 0.633 |
sll1905 | sll1124 | gene:10498754 | gene:10498231 | Hybrid sensory kinase; ORF_ID:sll1905. | Sensory transduction histidine kinase; ORF_ID:sll1124. | 0.975 |
sll1905 | slr0222 | gene:10498754 | gene:10499721 | Hybrid sensory kinase; ORF_ID:sll1905. | Hybrid sensory kinase; ORF_ID:slr0222. | 0.992 |
sll1905 | slr1037 | gene:10498754 | gene:10498039 | Hybrid sensory kinase; ORF_ID:sll1905. | CheY subfamily; ORF_ID:slr1037. | 0.900 |
sll1905 | slr1393 | gene:10498754 | gene:10498073 | Hybrid sensory kinase; ORF_ID:sll1905. | Sensory transduction histidine kinase; ORF_ID:slr1393. | 0.885 |
sll1905 | slr1414 | gene:10498754 | gene:10497598 | Hybrid sensory kinase; ORF_ID:sll1905. | Sensory transduction histidine kinase; ORF_ID:slr1414. | 0.976 |
sll1905 | slr1759 | gene:10498754 | gene:10497917 | Hybrid sensory kinase; ORF_ID:sll1905. | Hybrid sensory kinase; ORF_ID:slr1759. | 0.996 |
sll1905 | slr2104 | gene:10498754 | gene:10498868 | Hybrid sensory kinase; ORF_ID:sll1905. | Hybrid sensory kinase; ORF_ID:slr2104. | 0.995 |
sll1905 | sphS | gene:10498754 | gene:10499583 | Hybrid sensory kinase; ORF_ID:sll1905. | Regulation of the phosphate regulon; ORF_ID:sll0337. | 0.975 |
slr0222 | sll1124 | gene:10499721 | gene:10498231 | Hybrid sensory kinase; ORF_ID:slr0222. | Sensory transduction histidine kinase; ORF_ID:sll1124. | 0.763 |
slr0222 | sll1905 | gene:10499721 | gene:10498754 | Hybrid sensory kinase; ORF_ID:slr0222. | Hybrid sensory kinase; ORF_ID:sll1905. | 0.992 |
page 1 of 4