Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slr2011ORF_ID:slr2011; unknown protein. (199 aa)    
Predicted Functional Partners:
ssr3409
ORF_ID:ssr3409; unknown protein.
 
   
 0.992
slr2006
ORF_ID:slr2006; hypothetical protein.
 
 
 0.982
slr2012
ORF_ID:slr2012; unknown protein.
 
 
 
 0.980
slr2010
ORF_ID:slr2010; unknown protein.
 
 
 0.976
ssr3410
ORF_ID:ssr3410; unknown protein.
 
 
 0.974
ndhF
NADH dehydrogenase subunit 5; ORF_ID:slr2009.
 
 
 0.973
slr2008
ORF_ID:slr2008; hypothetical protein.
 
 
 0.953
ndhD
NADH dehydrogenase subunit 4; ORF_ID:slr2007.
 
 
 0.938
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
      
 0.734
slr1513
ORF_ID:slr1513; unknown protein.
  
     0.726
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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