STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr1740Extracellular solute-binding protein; ORF_ID:slr1740. (582 aa)    
Predicted Functional Partners:
sll1768
OppB in a binding protein-dependent transport system; ORF_ID:sll1768.
 
 0.988
slr0324
OppC in a binding protein-dependent transport system; ORF_ID:slr0324.
 0.988
sll0312
OppB in a binding protein-dependent transport system; ORF_ID:sll0312.
 
 0.981
sll0833
OppC in a binding protein-dependent transport system; ORF_ID:sll0833.
 0.979
sll1927
ABC transporter; ORF_ID:sll1927; Belongs to the ABC transporter superfamily.
 
 0.967
sll1699
Extracellular solute-binding protein; ORF_ID:sll1699.
  
  
 
0.925
nifJ
Pyruvate oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
  
 0.892
mutS-2
DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity).
     
 0.834
glnH/glnP
Glutamine-binding periplasmic protein/glutamine transport system permease protein; ORF_ID:sll1270.
   
 
 0.551
slr1739
ORF_ID:slr1739; photosystem II 13kD protein (PsbW) homologue; Belongs to the Psb28 family.
       0.504
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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