STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll1156Transposase; ORF_ID:sll1156. (141 aa)    
Predicted Functional Partners:
ssl2789
Resolvase; ORF_ID:ssl2789.
      
 0.979
sll1157
Transposase; ORF_ID:sll1157.
    0.943
ycf34
Ycf34 gene product; ORF_ID:ssr1425.
      
 0.899
ycf37
Ycf37 gene product; ORF_ID:slr0171.
      
 0.892
slr2096
Transposase; ORF_ID:slr2096.
    0.766
slr1903
Transposase; ORF_ID:slr1903.
    0.765
psbN
Photosystem II PsbN protein; May play a role in photosystem I and II biogenesis.
      
 0.690
sll1155
ORF_ID:sll1155; unknown protein.
       0.536
sll0778
ABC transporter; ORF_ID:sll0778.
  
     0.431
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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