STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytRMembrane bound protein; ORF_ID:sll1872. (463 aa)    
Predicted Functional Partners:
sll0793
ORF_ID:sll0793; hypothetical protein.
      
 0.879
slr0688
ORF_ID:slr0688; unknown protein.
 
     0.769
nreB
Nickel resistance; ORF_ID:slr0796.
      
 0.689
slr1871
Transcriptional regulator; ORF_ID:slr1871; Belongs to the LysR transcriptional regulatory family.
   
  
 0.682
ccsA
C-type cytochrome synthesis protein; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
      
 0.675
sll0154
Putative gluconeogenesis factor; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.638
lim
Lipophilic protein; ORF_ID:sll0648.
 
  
 0.602
slr0211
ORF_ID:slr0211; unknown protein.
  
   
 0.590
rffM-2
UDP-N-acetyl-D-mannosaminuronic acid transferase; ORF_ID:slr1271; Belongs to the glycosyltransferase 26 family.
 
   
 0.572
sll1873
ORF_ID:sll1873; unknown protein.
       0.532
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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